So it warns every time packages get installed out of sequence. There might be more critical things, let's say you were upgrading an important service that gets restarted after the package install. Now, if you were doing that while getting updates, I would make fun of you. For example, if you were playing media with something that was using the phonon gstreamer backend, and you updated it out from under foot, and the phonon libraries were wrong. It could crash something, under some circumstances I suppose, and that's the reason for the warning. You'll see that message often when it's sorting out a big run. That doesn't matter, as long as both packages are being installed in the same run.
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